Lecture 06, Concept 02: Molecular Dynamics As Prediction Of Motion - Challenges

Lecture 06, concept 02: Molecular dynamics as prediction of motion - challenges

Lecture 06, concept 03_: Molecular dynamics as sampling is a more sound approach

Lecture 06, concept 01: From static structures to simulations

Lecture 06, concept 05: Don't mistake models for reality

Lecture 06, concept 03: Molecular dynamics as sampling is a more sound approach

Lecture 06, concept 06: Molecular dynamics compared to experiments - different strengths

Lecture 06, concept 10: Flowchart of a typical simulation - femtosecond steps

Lecture 13, concept 02: Full simulations of binding reveal kinetics & barriers

MD Simulation Lecture 6: Tersoff Potential

Lecture 06, concept 04: Molecular dynamics simulations of real proteins

Lecture 06, concept 16: Energy minimisation avoids clashes, which avoids crashes

Lecture 06, concept 13: Examples of systems & timescales to target

Lecture 06, concept 11: Small fractions of states can still approximate the partition function well

Brian Cox explains quantum mechanics in 60 seconds - BBC News

Lecture 06, concept 20: Potential of mean force - free energy along a reaction coordinate

Lecture 06, concept 21: Calculating binding free energy - alchemical transformation

Molecular Dynamics

Casper Steinmann

Lecture 06, concept 07: Timescales in experiments and simulations